Commits

History for

onbiojava-5.0.0-alpha8

Commits on Mar 30, 2017

Commits on Mar 29, 2017

[maven-release-plugin] prepare for next development iteration
$josemduarte$ josemduarte
committed
9308320
[maven-release-plugin] prepare release biojava-5.0.0-alpha8
$josemduarte$ josemduarte
committed
615a1bb
more precise comparison of parsing speed between mtf and pdb file formats
$andreasprlic$ andreasprlic
committed
a216f92
Merge pull request #4 from andreasprlic/mmtf105
$josemduarte$ josemduarte
authored
2e3b35f
cleanup
$andreasprlic$ andreasprlic
committed
80a4e0c
new unit test that compares a slightly larger structure.
$andreasprlic$ andreasprlic
committed
87583d2
new version of test now only compares parsing in RAM
$andreasprlic$ andreasprlic
committed
f39c4cb
Updating test after file was remediated
$josemduarte$ josemduarte
committed
d277194
adding a parsing performance unit test for mmtf, that compares with pdb format parsing.
$andreasprlic$ andreasprlic
committed
504f3c8

Commits on Mar 28, 2017

Upgrading to mmtf 1.0.5
$josemduarte$ josemduarte
committed
26a5300

Commits on Mar 22, 2017

TestBond is updated to match the updated data in structure file used for test
$author$
Yana Valasatava
committed
e38a0f5

Commits on Mar 21, 2017

Create a test for the new parameters of the SmithWaterman3Daligner #552
$lafita$ lafita
committed
7be152f
Merge branch 'master' into smwatRmsd
$lafita$ lafita
committed
c5f666f

Commits on Mar 18, 2017

Revert "[maven-release-plugin]prepare release biojava-5.0.0-alpha7"
$josemduarte$ josemduarte
committed
71cc30e
[maven-release-plugin]prepare release biojava-5.0.0-alpha7
$author$
Jenkins
committed
e23ed6f

Commits on Feb 18, 2017

Catching early if the representative atom array is empty
$josemduarte$ josemduarte
committed
1a35f16

Commits on Feb 15, 2017

Removing some warnings from empty structure names
$sbliven$ sbliven
committed
7a1b158
Merge branch 'bugfixes-4.2' into master
$sbliven$ sbliven
committed
637aee6
Fix Quaternary symmetry symmetry detection bug
$sbliven$ sbliven
committed
ac19532

Commits on Feb 10, 2017

Better rules for Quaternary symm self-alignments
$sbliven$ sbliven
committed
89ac11a

Commits on Feb 6, 2017

Merge pull request #623 from andreasprlic/fix622
$andreasprlic$ andreasprlic
authored
16945e7

Commits on Jan 21, 2017

Now catching empty arrays in getCentroid
$josemduarte$ josemduarte
committed
80a3eaa
Now catching empty arrays in getCentroid
$josemduarte$ josemduarte
committed
feb9852
Less verbose logging in AsaCalculator
$josemduarte$ josemduarte
committed
fc2d368
Fix for #631
$josemduarte$ josemduarte
committed
63958d4
Less verbose logging in AsaCalculator
$josemduarte$ josemduarte
committed
c11c0d2
Better logging in symmetry package
$josemduarte$ josemduarte
committed
7f8659a
Fix for #631
$josemduarte$ josemduarte
committed
afd6fcb

Commits on Jan 13, 2017

Set default max RMSD for SmWat3D high to maintain default behavior
$lafita$ lafita
committed
d2644ea
Add two more parameters to Smith-Wat3Daligner
$lafita$ lafita
committed
16d0311
Add methods to delete alignment column from an AFPChain
$lafita$ lafita
committed
22931e8

Commits on Jan 12, 2017

The fix to the insertion code issue to is use the ResidueNumber object as the hash key instead of a string made from the residue number. Fixes bug where structures with insertion codes were likely…
$author$
Matt Larson
committed
387946f