Commits

History for

Commits on Jul 8, 2017

Revert to old behavior where process(int) return null on end-of-file.
$arojnuckarin$ arojnuckarin
committed
4f301ce
Attempt to fix issue #659 - Error parsing FASTA in multiple passes
$arojnuckarin$ arojnuckarin
committed
3a1a0a6

Commits on Jun 7, 2017

1. Added a new folder into main/java/org/biojava/nbio/core/sequence package
$jimty0511$ jimty0511
committed
a2ac8f5

Commits on Jun 2, 2017

Added List<String> of comments with getter and setter into AbstractSequence.java;
$jimty0511$ jimty0511
committed
6fa0df9

Commits on May 31, 2017

Removed unused import.
$psoares$ psoares
committed
5e4eb1d
Fix for #663 and some code cleanup.
$psoares$ psoares
committed
5e52308

Commits on Mar 28, 2017

adding a sequence.equals(Sequence) and hashCode class to sequences.
$valasatava$ valasatava
committed
3dadec1

Commits on Nov 9, 2016

Fix #596. Remove test for GenBank identifier parsing
$sbliven$ sbliven
committed
837dc63

Commits on Aug 18, 2016

making output less verbose
$andreasprlic$ andreasprlic
committed
285583d

Commits on Aug 16, 2016

updating to latest version of Cobertura tests. Now can successfully run locally.
$andreasprlic$ andreasprlic
committed
fbf294c

Commits on Jun 27, 2016

Normalize percentage of identity by the length without gaps #521
$lafita$ lafita
committed
3722ce5

Commits on Jun 24, 2016

Implement tests for new utility methods in sequence objects #491
$lafita$ lafita
committed
c8b1d07

Commits on Mar 9, 2016

Removing unnecessary casts
$sbliven$ sbliven
committed
38934ac
Removing unused imports
$sbliven$ sbliven
committed
e6b0dcc
Converting initial spaces to tabs.
$sbliven$ sbliven
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2417c23
Removing template messages
$sbliven$ sbliven
committed
2bb0271
Remove trailing whitespace globally from .java files
$sbliven$ sbliven
committed
809312e
Running addlicense.sh
$sbliven$ sbliven
committed
f4e725f

Commits on Jan 26, 2016

Merge branch 'master' of github.com:biojava/biojava
$andreasprlic$ andreasprlic
committed
c9d7456

Commits on Jan 25, 2016

getting Junit test to work on installations that have empty spaces in directory names
$andreasprlic$ andreasprlic
committed
dc5fa43

Commits on Jan 11, 2016

Merge branch 'pr/38'
$emckee2006$ emckee2006
committed
752a122
Change AbstractFeature Qualifiers to a key:Array from key:value #302
$emckee2006$ emckee2006
committed
c50a3a4

Commits on Dec 5, 2015

test case for #344
$andreasprlic$ andreasprlic
committed
184b220

Commits on Dec 3, 2015

Fixing some minor warnings
$sbliven$ sbliven
committed
c9af1d7

Commits on Dec 1, 2015

Adding biojava license statements
$sbliven$ sbliven
committed
dbe75e4

Commits on Nov 12, 2015

Fixing broken path
$josemduarte$ josemduarte
committed
4045e7a
Merge commit '248cc08c7fbbdc02249bcac0f10481127b7d3ac7'
$josemduarte$ josemduarte
committed
3abb93f

Commits on Nov 1, 2015

Increased type checking.
$paolopavan$ paolopavan
committed
248cc08

Commits on Oct 9, 2015

Refactoring proposed by Jose Manuel Duarte to separate this module from the old implementation in org.biojava.nbio.genome.query.BlastXMLQuery.
$paolopavan$ paolopavan
committed
f059f0e

Commits on Oct 6, 2015

Converting all line endings to Unix.
$sbliven$ sbliven
committed
124269e

Commits on Oct 5, 2015

Change in the way equals() is evaluated for Results, Hits, Hsps.Modified tests accordingly.
$paolopavan$ paolopavan
committed
26eaebf

Commits on Sep 28, 2015

Tests enhancement.
$paolopavan$ paolopavan
committed
d9c17d7

Commits on Sep 24, 2015

Better exception handling.
$paolopavan$ paolopavan
committed
911ba72

Commits on Sep 16, 2015

Massive refactoring: moved alignment data structures from biojava-alignment to biojava-core.
$paolopavan$ paolopavan
committed
5ad3cc9

Commits on Sep 9, 2015

Deleted test files that can be delegated to superclass
$paolopavan$ paolopavan
committed
51262c5