Commits

History for

onbiojava-7.2.4

Commits on Jan 7, 2025

Javadoc fix: errors in modfinder module
$josemduarte$ josemduarte
committed
bb07329

Commits on Apr 18, 2024

Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')
$jlerbsc$ jlerbsc
committed
b182121

Commits on Feb 26, 2024

fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality
$jlerbsc$ jlerbsc
committed
ac75f31

Commits on Jun 30, 2023

Try-with from sonar
$josemduarte$ josemduarte
committed
1678958

Commits on Nov 18, 2022

vuln-fix: Temporary File Information Disclosure
$JLLeitschuh$ $TeamModerne$
JLLeitschuh
and
TeamModerne
committed
e3ecec5

Commits on Nov 7, 2021

Minor Miscellaneous formatting and import
$aalhossary$ aalhossary
committed
419d5f0

Commits on Jan 20, 2021

compiling
$sbittrich$ sbittrich
committed
1b164a9

Commits on Jun 13, 2020

refactor code to java 8 streams api
$balaji-s$ balaji-s
committed
8998cbc

Commits on Jan 3, 2019

Automatically convert spaces to tabs
$sbliven$ sbliven
committed
9ae2c4f

Commits on Mar 12, 2018

Removing deprecations from v4
$josemduarte$ josemduarte
committed
9dbf83c

Commits on Sep 8, 2017

Fixing phosphosite urls and changing default url timeout to 30s
$josemduarte$ josemduarte
committed
67ca7f2

Commits on Nov 30, 2016

moving to Java 7
$andreasprlic$ andreasprlic
committed
4ee39f8
now also accepting old header line
$andreasprlic$ andreasprlic
committed
8210484

Commits on Nov 29, 2016

fix for #610
$andreasprlic$ andreasprlic
committed
6f28672

Commits on Aug 8, 2016

new utility classes to detect if a Group is polymeric, an amino acid, or a nucleotide group.
$andreasprlic$ andreasprlic
committed
46560c7

Commits on Jun 15, 2016

some formatting improvements.
$andreasprlic$ andreasprlic
committed
80dd887

Commits on Jun 14, 2016

Added list of chromophores to ptm_list.xml file, updated unit tests
$pwrose$ pwrose
committed
417e2da

Commits on Jun 9, 2016

Adds a new definitions file so the code can correctly detect Metal bonds. Slightly more efficient representation of standard amino acids.
$andreasprlic$ andreasprlic
committed
b39840a

Commits on Jun 5, 2016

squid:S2131 - Primitives should not be boxed just for String conversion
$author$
Mohamed Ezzat
committed
fa52fd8

Commits on Jun 1, 2016

Allowing detection of PTMs that interact with Terbium, as reported by @epeisach . Also less verbose PTM junit test.
$andreasprlic$ andreasprlic
committed
c561c3a

Commits on May 17, 2016

Updating change log in PTM definitions file to reflect most recent changes.
$andreasprlic$ andreasprlic
committed
f1c3f97

Commits on May 12, 2016

Merge pull request #479 from josemduarte/asymChainIds
$andreasprlic$ andreasprlic
committed
aa37b02

Commits on May 11, 2016

Fixed modfinder tests
$josemduarte$ josemduarte
committed
8459e6f

Commits on May 10, 2016

Added definition for PLP (pyridoxin-5'-phosphate) protein modification to xml file and added unit test.
$pwrose$ pwrose
committed
e814b32

Commits on May 4, 2016

Fix the compile errors - mainly by changin "setChainId" "setChainName"
$abradle$ abradle
committed
a4f8795

Commits on Mar 9, 2016

More whitespace fixes
$sbliven$ sbliven
committed
af59f90
Converting initial spaces to tabs.
$sbliven$ sbliven
committed
2417c23
Remove trailing whitespace globally from .java files
$sbliven$ sbliven
committed
809312e

Commits on Oct 6, 2015

Converting all line endings to Unix.
$sbliven$ sbliven
committed
124269e

Commits on Jan 30, 2015