Commits

History for

onbiojava-7.1.1

Commits on Mar 6, 2024

Merge pull request #1086 from jlerbsc/master
$josemduarte$ josemduarte
authored
81e0544
Merge pull request #1085 from josemduarte/miscfixes
$josemduarte$ josemduarte
authored
f94e577

Commits on Mar 5, 2024

fix sonar issue 2629 Logging arguments should not require evaluation
$jlerbsc$ jlerbsc
committed
1ac29b3

Commits on Mar 4, 2024

Merge pull request #1083 from josemduarte/parseEsmCifFix
$josemduarte$ josemduarte
authored
8b0c430
Replacing home-made copy by Files.copy. Other minor fixes
$josemduarte$ josemduarte
committed
37b5fca
Adding test case
$josemduarte$ josemduarte
committed
3e26abe

Commits on Mar 2, 2024

Better with ternary if
$josemduarte$ josemduarte
committed
ac14da4
Be more lenient with some missing atom_site fields
$josemduarte$ josemduarte
committed
805a902

Commits on Feb 26, 2024

fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality
$jlerbsc$ jlerbsc
committed
ac75f31

Commits on Jan 25, 2024

Merge pull request #1077 from hilbertglm/20240108-scop
$josemduarte$ josemduarte
authored
79f2062

Commits on Jan 8, 2024

Changed the URLs to the mirrors from http to https. Changed the name of the URL path to reflect a change in the v2 naming.
$hilbertglm$ hilbertglm
committed
f45e018

Commits on Jan 5, 2024

Updating test
$josemduarte$ josemduarte
committed
a3d9437

Commits on Dec 29, 2023

Updated to Jakarta JAXB and Java 17
$hilbertglm$ hilbertglm
committed
d5ea96c

Commits on Jun 30, 2023

Merge remote-tracking branch 'origin/master'
$josemduarte$ josemduarte
committed
4796663
Try-with from sonar
$josemduarte$ josemduarte
committed
9105226

Commits on Jun 27, 2023

Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)
$jlerbsc$ jlerbsc
committed
4a1863d

Commits on Jun 21, 2023

Second fix for sonar rule 's1130' throws declarations should not be superfluous. This fix is specific to constructor declarations.
$jlerbsc$ jlerbsc
committed
0819819

Commits on Jun 2, 2023

Cleanup
$josemduarte$ josemduarte
committed
fc07139

Commits on Jun 1, 2023

Merge pull request #1062 from jlerbsc/master
$josemduarte$ josemduarte
authored
56b98c8

Commits on May 24, 2023

Improvements from review comments
$josemduarte$ josemduarte
committed
4d146e1

Commits on May 21, 2023

Fix Sonar S1130 throws declarations should not be superfluous
$jlerbsc$ jlerbsc
committed
86307e9

Commits on May 12, 2023

Commits on May 11, 2023

Handling nulls in descriptions
$josemduarte$ josemduarte
committed
a8a96ec
New test
$josemduarte$ josemduarte
committed
3543eb9

Commits on May 10, 2023

Writing out entity info in CIF
$josemduarte$ josemduarte
committed
615a570

Commits on May 7, 2023

Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052
$author$
Pavan Kumar, Thummuru
committed
caa5789

Commits on Apr 16, 2023

Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052
$tmrpavan$ tmrpavan
committed
963dc01

Commits on Apr 6, 2023

Refactoring : Adding Static constants for NUCLEOTIDE_BACKBONE_ATOMS and AMINOACID_BACKBONE_ATOMS
$author$
Sreejith Nair
committed
a135683

Commits on Apr 5, 2023

Refactoring : Changes to refactor isPureTranslation method to eliminate complex conditional smell
$author$
Sreejith Nair
committed
4676fe7
Refactoring Decompose conditional : Changes to refactor getContactOverlapScore method to eliminate complex conditional smell
$author$
Sreejith Nair
committed
2ddf8b0
Refactoring : Extract method changes to reduce the cyclomatic complexity of getBackboneAtomArray
$author$
Sreejith Nair
committed
bf40264

Commits on Apr 3, 2023

Fixing test after PDB id obsoletion
$josemduarte$ josemduarte
committed
5de0163

Commits on Jan 30, 2023

More nullpdbid tests (#1056)
$josemduarte$ $sbliven$
josemduarte
and
sbliven
authored
043eb40
Merge pull request #1055 from josemduarte/fixCifSrcNatParsing
$josemduarte$ josemduarte
authored
5218e59