4.0.0 biojava org.biojava 5.0.0-SNAPSHOT biojava-protein-comparison-tool jar biojava-protein-comparison-tool http://source.rcsb.org GNU LGPL v2 http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt repo UTF-8 UTF-8 yyyyMMdd ${maven.build.timestamp} junit junit test org.biojava biojava-alignment 5.0.0-SNAPSHOT org.biojava biojava-core 5.0.0-SNAPSHOT org.biojava biojava-structure 5.0.0-SNAPSHOT org.biojava biojava-structure-gui 5.0.0-SNAPSHOT net.sourceforge.jmol jmol 13.0.14 org.slf4j slf4j-api org.apache.logging.log4j log4j-slf4j-impl org.apache.logging.log4j log4j-api org.apache.logging.log4j log4j-core org.apache.maven.plugins maven-shade-plugin package shade false junit:junit net.sourceforge.jmol:jmol javax/vecmath/** org.biojava:biojava-structure demo/DemoFATCAT* demo/DemoCE* *:* META-INF/*.SF META-INF/*.DSA META-INF/*.RSA Open Bioinformatics Foundation Open Bioinformatics Foundation ${project.version} ${project.version} ${project.name} ${project.name} org.biojava.nbio.structure.align.gui.AlignmentGui ${buildNumber} org.apache.maven.plugins maven-assembly-plugin src/main/assembly/assembly.xml assemble package single ${project.artifactId}-${project.version} false org.codehaus.mojo buildnumber-maven-plugin validate create false false