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Commits on Apr 6, 2023

• Refactoring : Adding Static constants for NUCLEOTIDE_BACKBONE_ATOMS and AMINOACID_BACKBONE_ATOMS

  

  Sreejith Nair

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Commits on Apr 5, 2023

• Refactoring : Changes to refactor isPureTranslation method to eliminate complex conditional smell

  

  Sreejith Nair

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• Refactoring Decompose conditional : Changes to refactor getContactOverlapScore method to eliminate complex conditional smell

  

  Sreejith Nair

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• Refactoring : Extract method changes to reduce the cyclomatic complexity of getBackboneAtomArray

  

  Sreejith Nair

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Commits on Apr 3, 2023

• Fixing test after PDB id obsoletion

  josemduarte

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Commits on Jan 30, 2023

• More nullpdbid tests (#1056)

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  josemduarte

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  sbliven

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• Merge pull request #1055 from josemduarte/fixCifSrcNatParsing

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• Merge pull request #1046 from BulkSecurityGeneratorProjectV2/fix/JLL/temporary_file_local_information_disclosure

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  josemduarte

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• More comprehensive fix

  josemduarte

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Commits on Jan 29, 2023

• Fix for entity_src_nat category parsing, when some items missing

  josemduarte

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Commits on Jan 26, 2023

• Merge pull request #1024 from aalhossary/add_file_download_validation

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  aalhossary

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Commits on Dec 24, 2022

• Adding placeholder for several common hashing algorithms

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• Minor corrections

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Commits on Nov 18, 2022

• vuln-fix: Temporary File Information Disclosure

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  JLLeitschuh

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  TeamModerne

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Commits on Oct 26, 2022

• Switching to new DNS name for wwpdb http file server

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Commits on Jun 20, 2022

• update assembly file test to new location

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Commits on Feb 21, 2022

• JavaDock

  aalhossary

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• Two utility methods to validate the downloaded file

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Commits on Feb 15, 2022

• Fix NullPointerException

  zedomel

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Commits on Feb 1, 2022

• Make sure there's no ambiguity in constructor to call

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• More readable

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Commits on Jan 31, 2022

• Handling some nulls in PdbId creation, #1019

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Commits on Jan 3, 2022

• proper format of floating point (double) variable.

  

  aalhossary

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Commits on Dec 13, 2021

• Docs

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Commits on Dec 8, 2021

• Merge pull request #1001 from aalhossary/fix_1000_Resolution_lost_in_cryo-EM

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• Referring to DEFAULT_RESOLUTION instead of 99

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Commits on Dec 7, 2021

• Resolution defaults to 99 if no value is available.

  aalhossary

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Commits on Dec 6, 2021

• Safer condition

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Commits on Dec 2, 2021

• Parsing EM resolution in mmCif parser

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Commits on Nov 27, 2021

• Correcting reporting

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  aalhossary

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• Removed apparently old documentation

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• Parsing REMARK 2 and REMARK 3 (new format)

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Commits on Nov 25, 2021

• Merge pull request #999 from aalhossary/fix_992_PDB_Different_Date_fields

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Commits on Nov 24, 2021

• Removing empy test

  josemduarte

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• Consistent indentation

  aalhossary

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